Pumpkin protein cookies are soft, perfectly spiced, and packed with protein for a cozy fall treat. Pumpkin puree, ground flax seed, chia seeds, and vanilla whey protein make a thick, wholesome dough. Twenty-six cookies bake in 10-12 minutes at 3 g carbs each.
Craving the cozy, comforting flavors of fall without derailing your health goals? Look no further! These Pumpkin Protein Cookies are your answer. They’re incredibly soft, perfectly spiced, and packed with protein to keep you satisfied. Your kitchen will smell like a pumpkin spice dream, and you’ll have a batch of guilt-free, low-carb treats ready in under 20 minutes. Let’s get baking!
Ingredients
• What You Will Need
• 1/4 cup or 28g (0.99 oz) ground flax seed
• 2 Tbsp or 24g (0.85 oz) chia seeds
• 1/2 teaspoon or 1.5g (0.05 oz) ground cinnamon
• 3 large eggs
• 2 teaspoons or 10ml vanilla extract
• 1/4 cup or 60ml light almond milk
• 1/4 cup or 50g (1.76 oz) Stevia in the Raw, granulated
• 2 servings or ~60g (2.12 oz) vanilla or unflavored whey protein powder
• 1 teaspoon or 5g (0.18 oz) baking soda
• 1 teaspoon or 4g baking powder
• 1 can 15oz or 425g pumpkin puree
Instructions
1. Directions
2. Preheat your oven to 350°F or 175°C (350°F) and line two baking sheets with parchment paper.
3. In a large bowl, whisk together all the dry : ground flax seed, chia seeds, cinnamon, whey protein powder, Stevia, baking soda, and baking powder until well combined.
4. In a separate medium bowl, mix the wet : pumpkin puree, eggs, vanilla extract, and almond milk until smooth.
5. Pour the wet mixture into the dry and stir gently until a thick dough forms. Be careful not to overmix.
6. Drop rounded tablespoons of dough onto the prepared baking sheets, spacing them about 2 inches apart. Note that these cookies will not spread much during baking.
7. Bake for 10-12 minutes, or until the cookies are firm to the touch and a toothpick inserted into the center comes out clean.
8. Allow the cookies to cool on the baking sheet for 5 minutes before transferring them to a wire rack to cool completely.
Nutritional Information
• Makes: 26 cookies
• Calories: 40 per cookie
• Carbs: 3g
• Fats: 2g (0.07 oz)
Pro Tips
• Add a pinch of nutmeg and ground ginger along with the cinnamon for a full pumpkin spice flavor profile.
• Fold in 1/4 cup (960 ml) of sugar-free chocolate chips or chopped pecans for extra texture and flavor.
• Store these cookies in an airtight container in the refrigerator for up to a week. Due to the high moisture content, they stay fresher when chilled.
• Vanilla or unflavored whey protein powder works best. If using unflavored, you may want to add a little extra sweetener to taste.
FAQ
Q: Can I use a different type of protein powder
A: This recipe works best with vanilla or unflavored whey protein powder for the ideal soft texture. Using other protein powders like casein or plant-based options may significantly change the cookie’s final texture and moisture level.
Q: How do I store these pumpkin protein cookies
A: Store the cookies in an airtight container in the refrigerator for up to one week. Due to the high moisture from the pumpkin puree, keeping them chilled is essential for maintaining freshness.
Q: Are these cookies keto-friendly
A: Yes, with only 3 grams (0.11 oz) of carbs and 2 grams (0.07 oz) of fat per cookie, they are a perfect keto-friendly and low-carb treat to enjoy without compromising your diet.
Q: Why didn’t my cookies spread out in the oven
A: It is normal for these cookies not to spread. The recipe creates a thick, cake-like dough that is high in protein and fiber, which causes it to hold its shape rather than flatten out like traditional high-fat cookies.
Pro Tips
- Whisk all the dry ingredients — ground flax, chia seeds, cinnamon, whey protein, Stevia, baking soda, and baking powder — first so the leavening and seeds spread evenly through the thick dough.
- Add a pinch of nutmeg and ground ginger along with the cinnamon for a full pumpkin spice flavor profile.
- Fold in 1/4 cup of sugar-free chocolate chips or chopped pecans for extra texture and flavor.
- These cookies will not spread much during baking — drop rounded tablespoons and gently flatten the tops if you prefer a flatter cookie.
Frequently Asked Questions
How much protein per cookie?
Each of the 26 cookies has 40 calories with 3 g protein, 3 g carbs, and 2 g fat, with two servings of vanilla or unflavored whey protein powder in the batch.
Can I add mix-ins to the dough?
Yes — the recipe's own suggestion is 1/4 cup of sugar-free chocolate chips or chopped pecans folded in for extra texture and flavor.
Why didn't my cookies spread?
They are not meant to. The flax, chia, and protein dough holds its shape — bake 10-12 minutes until firm and a toothpick in the center comes out clean.
Are these pumpkin cookies keto-friendly?
Per cookie: 3 g carbs and 3 g protein, built on pumpkin puree, ground flax seed, chia seeds, light almond milk, and Stevia.
Recipe card below.
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Pumpkin Protein Cookies
Ingredients
Method
- Directions
- Preheat your oven to 350°F or 175°C (350°F) and line two baking sheets with parchment paper.
- In a large bowl, whisk together all the dry : ground flax seed, chia seeds, cinnamon, whey protein powder, Stevia, baking soda, and baking powder until well combined.
- In a separate medium bowl, mix the wet : pumpkin puree, eggs, vanilla extract, and almond milk until smooth.
- Pour the wet mixture into the dry and stir gently until a thick dough forms. Be careful not to overmix.
- Drop rounded tablespoons of dough onto the prepared baking sheets, spacing them about 2 inches apart. Note that these cookies will not spread much during baking.
- Bake for 10-12 minutes, or until the cookies are firm to the touch and a toothpick inserted into the center comes out clean.
- Allow the cookies to cool on the baking sheet for 5 minutes before transferring them to a wire rack to cool completely.
- Add a pinch of nutmeg and ground ginger along with the cinnamon for a full pumpkin spice flavor profile.
- Fold in 1/4 cup (960 ml) of sugar-free chocolate chips or chopped pecans for extra texture and flavor.








